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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5698984_5699585_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5698984 - 5699585
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTCTGTTTAACA
Flanking Amino Acid:
LFRGINLADGKWHRVAISVQ
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
82.3
0.73
0.8
77.7
36
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
62.4
0.39
1.8
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030433
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022519
5696043 - 5705912
9870