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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5699800_5705327_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5699800 - 5705327
Intron Length:
5528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCCACT
Flanking Amino Acid:
LSAPTKQLYPASPFPEDFSI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.5
0.75
0.8
75.1
34.5
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
48.1
-0
1.9
67.87
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030433
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022519
5696043 - 5705912
9870