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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_574754_577486_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
574754 - 577486
Intron Length:
2733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGACAAGTAATT
Flanking Amino Acid:
NYLFYKRFVEKTMTQENWTD
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
42.4
-0.5
2.2
61.74
41.5

Associated Gene:

Gene:
EXD3
Ensembl Gene ID:
ENSAPLG00000015358
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018673
399892 - 700027
300136
ENSAPLT00000018211
399892 - 700027
300136
ENSAPLT00000016015
399892 - 700027
300136