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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_584950_585783_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
584950 - 585783
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
EPGFNIRDIARQYQGLSRYK
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83.2
0.75
0.9
76.5
37.7
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
EXD3
Ensembl Gene ID:
ENSAPLG00000015358
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016015
399892 - 700027
300136
ENSAPLT00000018673
399892 - 700027
300136
ENSAPLT00000018211
399892 - 700027
300136