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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5903118_5906630_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5903118 - 5906630
Intron Length:
3513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GGACATCTAACC
Flanking Amino Acid:
CKHKYPDQPGRFAKLLLRLP
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
72.6
0.51
0.7
65.4
30.5
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
45.4
-0.3
1.8
52.69
37.4

Associated Gene:

Gene:
RXRA
Ensembl Gene ID:
ENSAPLG00000013150
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013743
5902970 - 5952785
49816