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Intron Name: Anas_platyrhynchos_platyrhynchos_18_5906737_5907972_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5906737 - 5907972

Intron Length:

1236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACATGCG

5'SS Class:

major

3'SS Sequence:

CCTTGCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

CTTCCCTTGCCT

Flanking Amino Acid:

CLRAIVLFNPDSKGLSNPAE

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.1

54.5

42.9

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

80.6

0.69

0.8

76.8

31.9

Minor 5ss

31.8

-2.1

3.4

41.1

45.4

Minor BPS

47.8

-0

3.5

80.72

41.3

Associated Gene:

Gene:

RXRA

Ensembl Gene ID:

ENSAPLG00000013150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013743

5902970 - 5952785

49816