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Intron Name: Anas_platyrhynchos_platyrhynchos_18_5908065_5909096_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5908065 - 5909096

Intron Length:

1032

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGAAGA

5'SS Class:

major

3'SS Sequence:

GTGTCCTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAATGCTGACAC

Flanking Amino Acid:

HSAGVGAIFDRVLTELVSKM

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

67.8

39.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.6

0.67

0.9

73.2

37.1

Minor 5ss

-2.8

31.1

42.6

Minor BPS

43.4

-0.5

2.1

54.88

42.4

Associated Gene:

Gene:

RXRA

Ensembl Gene ID:

ENSAPLG00000013150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013743

5902970 - 5952785

49816