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Intron Name: Anas_platyrhynchos_platyrhynchos_18_5909230_5913160_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5909230 - 5913160

Intron Length:

3931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAC

U12 Branch Point Sequence:

TGGCTCTAACCC

Flanking Amino Acid:

LDDQVILLRAGWNELLIASF

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

72.3

0.55

73.3

28.9

Major PPT

80.7

0.69

0.7

73.2

31.7

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

46.2

-0.3

1.9

55.7

42.7

Associated Gene:

Gene:

RXRA

Ensembl Gene ID:

ENSAPLG00000013150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013743

5902970 - 5952785

49816