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Intron Name: Anas_platyrhynchos_platyrhynchos_18_5918557_5927656_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5918557 - 5927656

Intron Length:

9100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCGTTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CCGGGCTGACCC

Flanking Amino Acid:

KCLAMGMKREAVQEERQRGK

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

72.3

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

78.5

0.64

0.9

41.8

Minor 5ss

-2.2

3.2

39.6

45.9

Minor BPS

39.2

-0.8

2.1

41.89

45.2

Associated Gene:

Gene:

RXRA

Ensembl Gene ID:

ENSAPLG00000013150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013743

5902970 - 5952785

49816