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Intron Name: Anas_platyrhynchos_platyrhynchos_18_5927837_5928722_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5927837 - 5928722

Intron Length:

886

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGCTG

5'SS Class:

major

3'SS Sequence:

GTCCCCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CATCCCCTAACC

Flanking Amino Acid:

ICAICGDRSSGKHYGVYSCE

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

64.5

46.9

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

73.2

0.52

0.9

34.4

Minor 5ss

33.3

-1.9

3.6

46.8

48.5

Minor BPS

61.6

0.34

1.7

70.24

40.5

Associated Gene:

Gene:

RXRA

Ensembl Gene ID:

ENSAPLG00000013150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013743

5902970 - 5952785

49816