About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6081002_6081701_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6081002 - 6081701
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
CTGTGTTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ACTGCAAGAACT
Flanking Amino Acid:
GKYILAATLDNTLKLWDYSK
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
45.4
-0.2
2
65.68
44.2

Associated Gene:

Gene:
WDR5B
Ensembl Gene ID:
ENSAPLG00000014714
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015380
6078929 - 6088648
9720