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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6081778_6082579_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6081778 - 6082579
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATTTTCACT
Flanking Amino Acid:
ASGQCLKTLIDDDNPPVSFV
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.3
0.62
0.8
72.1
33.2
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
63.2
0.5
1.8
83.78
37.4

Associated Gene:

Gene:
WDR5B
Ensembl Gene ID:
ENSAPLG00000014714
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015380
6078929 - 6088648
9720