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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6083959_6084334_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6083959 - 6084334
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTCAATCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATTTCTTCAATC
Flanking Amino Acid:
PQSNLIVSGSFDESVRIWDV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
77.9
0.63
0.9
74
35.3
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
69.6
0.59
1.4
76.93
33

Associated Gene:

Gene:
WDR5B
Ensembl Gene ID:
ENSAPLG00000014714
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015380
6078929 - 6088648
9720