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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6085181_6086118_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6085181 - 6086118
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAG
U12 Branch Point Sequence:
TTTTCCTTTGTT
Flanking Amino Acid:
FEKTISGHKLGISDVAWSSD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
48.6
-0
1.5
55.4
40.2
Major PPT
81.1
0.7
0.8
80.2
31.9
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
48.6
-0
3.6
87.87
37.8

Associated Gene:

Gene:
WDR5B
Ensembl Gene ID:
ENSAPLG00000014714
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015380
6078929 - 6088648
9720