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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6087629_6088457_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6087629 - 6088457
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
AGTTTATTAAGC
Flanking Amino Acid:
TPSSSTNQSKPAPVKPNYAL
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
54.1
0.11
1.9
66.42
38.8

Associated Gene:

Gene:
WDR5B
Ensembl Gene ID:
ENSAPLG00000014714
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015380
6078929 - 6088648
9720