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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6117416_6118630_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6117416 - 6118630
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAACC
5'SS Class:
major
3'SS Sequence:
TGTCGTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGTGTTTTCACT
Flanking Amino Acid:
RKPSAGTQSAGAQQAVAVSS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
67.1
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
61
0.25
1.2
62.7
42.4
Minor 5ss
40.9
-1
2.7
53.6
43.2
Minor BPS
50.8
0.11
1.8
69.96
41.5

Associated Gene:

Gene:
BRD3
Ensembl Gene ID:
ENSAPLG00000008591
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008968
6113610 - 6132256
18647