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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6118846_6120521_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6118846 - 6120521
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CACTCATGAAGC
Flanking Amino Acid:
VVPPTPPVVKKKGVKRKADT
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
86.7
0.83
0.7
84.4
23.4
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
45.7
-0.3
2
53.47
43.8

Associated Gene:

Gene:
BRD3
Ensembl Gene ID:
ENSAPLG00000008591
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008968
6113610 - 6132256
18647