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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6120894_6126596_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6120894 - 6126596
Intron Length:
5703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTCCA
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTCTCCCCT
Flanking Amino Acid:
KHPMDLSTVKKKMDSREYQD
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65.5
40.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
35.1
-1.7
3.1
42.2
38.5
Minor BPS
42
-0.5
3.7
79.4
43

Associated Gene:

Gene:
BRD3
Ensembl Gene ID:
ENSAPLG00000008591
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008968
6113610 - 6132256
18647