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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6245794_6248953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6245794 - 6248953

Intron Length:

3160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTTCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TCCGATTCAATT

Flanking Amino Acid:

LAKVFLEFKERLLIYGKYCS

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

64.5

0.33

62.9

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

46.5

-0.1

1.8

60.16

44.3

Associated Gene:

Gene:

VAV2

Ensembl Gene ID:

ENSAPLG00000007510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026236

6146053 - 6265231

119179

ENSAPLT00000007885

6146053 - 6265619

119567