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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6250480_6250880_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6250480 - 6250880

Intron Length:

401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATGCAT

U12 Branch Point Sequence:

CCCCCATGCATC

Flanking Amino Acid:

RVLKYHLLLKELLSHSSERP

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

54.9

0.12

1.4

39.8

Major PPT

86.8

0.83

0.9

84.6

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

38.8

-0.9

1.9

41.18

39.3

Associated Gene:

Gene:

VAV2

Ensembl Gene ID:

ENSAPLG00000007510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026236

6146053 - 6265231

119179

ENSAPLT00000007885

6146053 - 6265619

119567