Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6250950_6253659_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6250950 - 6253659

Intron Length:

2710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGGTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TAAAAATCAACA

Flanking Amino Acid:

QLKEALEAMQDLAMYINEVK

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

43.2

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

93.5

0.98

0.6

92.1

18.4

Minor 5ss

31.8

-2.1

3.8

49.3

Minor BPS

45.5

-0.3

1.9

57.8

40.2

Associated Gene:

Gene:

VAV2

Ensembl Gene ID:

ENSAPLG00000007510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026236

6146053 - 6265231

119179

ENSAPLT00000007885

6146053 - 6265619

119567