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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6257916_6258695_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6257916 - 6258695

Intron Length:

780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

ATGTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

GTTAAATTAACC

Flanking Amino Acid:

CLEIIPPCKIGSSAEQDLLS

Intron Amino Acid Position:

565

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

80.5

29.8

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

80.1

0.68

0.9

73.9

36.1

Minor 5ss

36.9

-1.5

49.9

46.4

Minor BPS

0.2

1.8

70.91

39.3

Associated Gene:

Gene:

VAV2

Ensembl Gene ID:

ENSAPLG00000007510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026236

6146053 - 6265231

119179

ENSAPLT00000007885

6146053 - 6265619

119567