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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6261066_6261828_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6261066 - 6261828
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ACCTCGGGCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GTCTCAGCACCT
Flanking Amino Acid:
SREIDYTAYPWFAGNMERQQ
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
57
0.16
1
53.1
41
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
40
-0.6
2.5
61.98
47.4

Associated Gene:

Gene:
VAV2
Ensembl Gene ID:
ENSAPLG00000007510
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026236
6146053 - 6265231
119179
ENSAPLT00000007885
6146053 - 6265619
119567