Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6262325_6264983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6262325 - 6264983

Intron Length:

2659

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACTC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCTCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGCTGCTGACGT

Flanking Amino Acid:

STSRTFTRSPVFTPRVIGTA

Intron Amino Acid Position:

773

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

35.3

Major BPS

66.3

0.4

1.1

41.8

Major PPT

75.8

0.58

0.8

69.4

31.1

Minor 5ss

36.5

-1.5

3.2

50.8

45.8

Minor BPS

42.3

-0.5

2.3

60.99

48.3

Associated Gene:

Gene:

VAV2

Ensembl Gene ID:

ENSAPLG00000007510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026236

6146053 - 6265231

119179

ENSAPLT00000007885

6146053 - 6265619

119567