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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6274869_6275642_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6274869 - 6275642
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCCCCCTGACCC
Flanking Amino Acid:
VVTERIEGIQNMPNVRDHDA
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.3
32.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.9
0.49
0.9
64.9
30.7
Minor 5ss
33.5
-1.9
3.1
44.4
43.7
Minor BPS
46.9
-0.2
1.8
52.11
45.1

Associated Gene:

Gene:
SARDH
Ensembl Gene ID:
ENSAPLG00000007295
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007614
6271500 - 6291957
20458