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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6281872_6281991_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6281872 - 6281991
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
GCTTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
GGTCTTTCCAGT
Flanking Amino Acid:
GWFSPKGAAPVLDYDYYGAY
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
60.4
44.4
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
74.6
0.55
0.8
65.7
36
Minor 5ss
41.9
-0.9
2.8
55.9
42
Minor BPS
39.9
-0.7
2
54.44
41.3

Associated Gene:

Gene:
SARDH
Ensembl Gene ID:
ENSAPLG00000007295
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007614
6271500 - 6291957
20458