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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6284751_6284973_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6284751 - 6284973
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CCTCCTTTCACC
Flanking Amino Acid:
LGMMSLQGPLSRAVLQEVLD
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
84
0.76
0.8
78.1
30.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
54.8
0.13
1.8
62.93
43.1

Associated Gene:

Gene:
SARDH
Ensembl Gene ID:
ENSAPLG00000007295
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007614
6271500 - 6291957
20458