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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6299526_6299638_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6299526 - 6299638
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
TCCTCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCGCTCTGACCC
Flanking Amino Acid:
ADGHYSPHFQEIRMLKELVA
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
59.1
42.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78
0.63
0.7
72.5
25.6
Minor 5ss
30
-2.3
3.4
42
44.8
Minor BPS
44.6
-0.4
1.7
47.55
42.2

Associated Gene:

Gene:
DBH
Ensembl Gene ID:
ENSAPLG00000007151
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007425
6297171 - 6307806
10636