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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6300563_6301631_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6300563 - 6301631
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
TTTTGCCTACCA
Flanking Amino Acid:
VHYHNPLVFKGRRDSSGIRL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
78.3
0.64
0.9
71.2
39.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
51.1
0.03
2.3
75.88
41.5

Associated Gene:

Gene:
DBH
Ensembl Gene ID:
ENSAPLG00000007151
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007425
6297171 - 6307806
10636