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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6352708_6353651_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6352708 - 6353651
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGTGTATA
5'SS Class:
major
3'SS Sequence:
CTCTCATTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
VERKKSADVLAVADEAGYYF
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.8
35.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
71.8
0.49
1
75.3
32.3
Minor 5ss
39.5
-1.2
2.7
42.1
44.8
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
ADAMTSL2
Ensembl Gene ID:
ENSAPLG00000007114
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007397
6336824 - 6358975
22152