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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6357230_6357808_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6357230 - 6357808
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTC
Flanking Amino Acid:
KSQERHCLRQRRKSVSGLAN
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
57
42.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
89
26.7
Minor 5ss
30
-2.3
3.4
41.6
45.1
Minor BPS
67.2
0.52
1.5
74.74
36.3

Associated Gene:

Gene:
ADAMTSL2
Ensembl Gene ID:
ENSAPLG00000007114
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007397
6336824 - 6358975
22152