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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6397705_6397867_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6397705 - 6397867
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAGGTGAG
5'SS Class:
major
3'SS Sequence:
TCCCCCTCCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
EYEQIKDSVRNRRVSCAEIK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
67.7
40.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
51.8
0.04
1.6
60.1
29.7
Minor 5ss
22
-3.2
4.1
30.2
37.4
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
SLC2A6
Ensembl Gene ID:
ENSAPLG00000006885
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007157
6394548 - 6399281
4734