Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6404881_6404988_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6404881 - 6404988

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCACAT

U12 Branch Point Sequence:

CAGCTCACATCC

Flanking Amino Acid:

VLYGLSALGKKGDAISYARI

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.9

29.9

Major BPS

65.3

0.38

1.1

72.6

33.1

Major PPT

0.81

0.7

80.8

24.4

Minor 5ss

33.8

-1.8

3.5

47.5

42.5

Minor BPS

38.4

-0.9

1.8

41.83

38.3

Associated Gene:

Gene:

CACFD1

Ensembl Gene ID:

ENSAPLG00000006756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026689

6404787 - 6408680

3894

ENSAPLT00000007010

6404787 - 6410471

5685