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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6405308_6405708_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6405308 - 6405708

Intron Length:

401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTGGA

5'SS Class:

major

3'SS Sequence:

GCTCTGCCTGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

GCAGGGTTAACT

Flanking Amino Acid:

PLNIAAGVWMMLNAFVLFLC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

70.5

35.4

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

0.02

1.7

57.9

38.5

Minor 5ss

-2.4

3.1

35.6

41.4

Minor BPS

44.4

-0.3

2.4

60.91

48.4

Associated Gene:

Gene:

CACFD1

Ensembl Gene ID:

ENSAPLG00000006756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007010

6404787 - 6410471

5685