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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6405308_6408660_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
6405308 - 6408660
Intron Length:
3353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTTTGCTCT
5'SS Class:
weak_minor
3'SS Sequence:
GCTCTGCCTGGAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCAGGGTTAACT
Flanking Amino Acid:
MIWGVSQLNAFVLFLC
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.2
51.2
40.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
51
0.02
1.7
57.9
38.5
Minor 5ss
54
0.14
2.3
72.7
37.5
Minor BPS
44.4
-0.3
2.4
60.91
48.4

Associated Gene:

Gene:
CACFD1
Ensembl Gene ID:
ENSAPLG00000006756
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026689
6404787 - 6408680
3894