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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6405782_6410347_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6405782 - 6410347

Intron Length:

4566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

TCTTGCCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAA

U12 Branch Point Sequence:

GGTCACTGAAAG

Flanking Amino Acid:

CRIAGVIGGVSCAFAGLWNC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

78.2

36.4

Major BPS

0.3

34.1

Major PPT

82.6

0.73

0.8

73.4

37.1

Minor 5ss

42.3

-0.9

2.8

55.7

41.6

Minor BPS

46.1

-0.4

1.8

50.71

Associated Gene:

Gene:

CACFD1

Ensembl Gene ID:

ENSAPLG00000006756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007010

6404787 - 6410471

5685