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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6414997_6415316_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6414997 - 6415316
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATCT
Flanking Amino Acid:
VPQEQTETSGGVCGKLFLNA
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.2
0.61
0.8
71.5
33
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
73.9
0.83
1.5
88.38
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006553
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006839
6413217 - 6415653
2437