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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6422325_6422592_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6422325 - 6422592
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
TATCACTTAACC
Flanking Amino Acid:
INQRPLFTHLAVKVKGEYVV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
78.6
0.64
0.8
70.7
36.1
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
72.3
0.68
1.5
78.82
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017995
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028734
6421945 - 6427839
5895