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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6422674_6423359_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6422674 - 6423359
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCATCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTTTTCCATC
Flanking Amino Acid:
SGSYTEGKAKEYVTFLSLPY
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
79.6
35.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.2
0.68
0.8
76.8
31.7
Minor 5ss
38.1
-1.3
2.7
51.1
45.4
Minor BPS
50.2
-0
1.9
69.41
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017995
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028734
6421945 - 6427839
5895