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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6423481_6424813_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6423481 - 6424813
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CCTCTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CCAATCTTGACA
Flanking Amino Acid:
FSLCVMGSCRAFGCDGRMDS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
76.3
0.59
0.9
75.5
32.9
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
57
0.21
1.4
58.97
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017995
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028734
6421945 - 6427839
5895