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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6424963_6425165_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6424963 - 6425165
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GAAAGAGTAACT
Flanking Amino Acid:
TWTSAIGFAKGDMQCKHLCR
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.1
0.56
0.8
65.7
36
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
39.9
-0.6
2.4
57.16
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017995
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028734
6421945 - 6427839
5895