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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6434645_6434853_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6434645 - 6434853
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTCATTT
Flanking Amino Acid:
RVLVKEKSSDGLTRTVAMDC
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
50.1
0.08
1.8
70.88
41.3

Associated Gene:

Gene:
REXO4
Ensembl Gene ID:
ENSAPLG00000005865
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006075
6433299 - 6437548
4250