Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6435573_6435936_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6435573 - 6435936

Intron Length:

364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CAATTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

CGCTCTTTAAAC

Flanking Amino Acid:

VGHALHNDLKVLFLDHPKKK

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

72.3

37.8

Major BPS

0.7

0.9

79.6

29.1

Major PPT

80.4

0.68

0.9

77.4

36.3

Minor 5ss

39.1

-1.2

3.1

52.5

44.7

Minor BPS

62.4

0.37

1.5

63.9

41.8

Associated Gene:

Gene:

REXO4

Ensembl Gene ID:

ENSAPLG00000005865

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006075

6433299 - 6437548

4250