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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6436012_6436647_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6436012 - 6436647
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
KYKPFRQRVKSARPSLKLLC
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.7
0.87
0.7
81.1
35.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
REXO4
Ensembl Gene ID:
ENSAPLG00000005865
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006075
6433299 - 6437548
4250