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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6447578_6448038_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6447578 - 6448038
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTACAG
Flanking Amino Acid:
KELFVTWNNEISSLFLCLVM
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.9
0.74
0.9
76.7
36.2
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
47.5
-0.3
2
58.28
43

Associated Gene:

Gene:
STKLD1
Ensembl Gene ID:
ENSAPLG00000005819
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042175
6437469 - 6450460
12992
ENSAPLT00000006028
6437469 - 6450460
12992