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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6448114_6449927_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6448114 - 6449927
Intron Length:
1814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTCTCAGTA
Flanking Amino Acid:
SEKKKYVIKQAMDLLKLRHS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.7
85.5
27.9
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
52.6
0.08
1.7
68.85
37.7

Associated Gene:

Gene:
STKLD1
Ensembl Gene ID:
ENSAPLG00000005819
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006028
6437469 - 6450460
12992