Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6449485_6449927_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6449485 - 6449927

Intron Length:

443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

TTGTCTTCTATT

Flanking Amino Acid:

SEKKKYVIKQVECTDEMQAN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

71.5

40.2

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

76.8

0.6

72.2

42.7

Minor 5ss

27.4

-2.6

2.7

31.3

42.4

Minor BPS

54.5

0.22

1.9

75.66

41.6

Associated Gene:

Gene:

STKLD1

Ensembl Gene ID:

ENSAPLG00000005819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042175

6437469 - 6450460

12992