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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6460260_6461203_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6460260 - 6461203
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTAAAAA
Flanking Amino Acid:
SILWDLKFLMRNLALGGGLL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74
0.54
0.8
69.1
31.6
Minor 5ss
47.5
-0.2
2.8
64.7
46.6
Minor BPS
50.7
0.02
1.7
62.02
38

Associated Gene:

Gene:
SURF4
Ensembl Gene ID:
ENSAPLG00000005704
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005919
6455257 - 6461961
6705