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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6461391_6461694_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6461391 - 6461694
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTCCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
LLHFDMNFFSILQNIVGTAL
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.9
0.74
0.7
77.4
24.6
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
SURF4
Ensembl Gene ID:
ENSAPLG00000005704
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005919
6455257 - 6461961
6705