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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6466742_6467180_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6466742 - 6467180
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCGCACCATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TGCTGCTCAATC
Flanking Amino Acid:
GKRYQKALKAYEECQKKGVE
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
58.9
0.2
0.9
56.4
33.8
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
50.8
0
2
63.09
42.8

Associated Gene:

Gene:
SURF2
Ensembl Gene ID:
ENSAPLG00000005587
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005788
6464926 - 6467856
2931